Publications
2025
- Naruki Yoshikawa, Yuki Asano, Don N. Futaba, Kanako Harada, Taro Hitosugi, Genki N. Kanda, Shoichi Matsuda, Yuuya Nagata, Keisuke Nagato, Masanobu Naito, Tohru Natsume, Kazunori Nishio, Kanta Ono, Haruka Ozaki, Woosuck Shin, Junichiro Shiomi, Kunihiko Shizume, Koichi Takahashi, Seiji Takeda, Ichiro Takeuchi, Ryo Tamura, Koji Tsuda, Yoshitaka Ushiku, Self-driving laboratories in Japan, Digital Discovery (2025). DOI:10.1039/d4dd00387j
- Seiji Kawai, Masayuki Karasawa, Yoshitaka Moriwaki, Tohru Terada, Yohei Katsuyama, Yasuo Ohnishi, Structural Basis for the Catalytic Mechanism of ATP-Dependent Diazotase CmaA6, Angew. Chem. Int. Ed. e202505851, DOI:10.1002/anie.202505851, (2025).
- Ryuichiro Ishitani, Yoshitaka Moriwaki, Improving Stereochemical Limitations in Protein-Ligand Complex Structure Prediction, bioRxiv, DOI:10.1101/2025.03.25.645362
2024
- Takahiro Mori, Yoshitaka Moriwaki, Kousuke Sakurada, Shuang Lyu, Stanislav Kadlcik, Jiri Janata, Aninda Mazumdar, Markéta Koběrská, Tohru Terada, Zdenek Kamenik, Ikuro Abe Molecular basis for the diversification of lincosamide biosynthesis by pyridoxal phosphate-dependent enzymes, Nature Chemistry, DOI: 10.1038/s41557-024-01687-7, (2024).
- Gyuri Kim, Sewon Lee, Eli Levy Karin, Hyunbin Kim, Yoshitaka Moriwaki, Sergey Ovchinnikov, Martin Steinegger, Milot Mirdita, Easy and accurate protein structure prediction using ColabFold, Nature Protocols, DOI: 10.1038/s41596-024-01060-5, (2024).
- Masato Homma, Takatoshi Wakabayashi, Yoshitaka Moriwaki, Takumi Shigeta, Kazuki Isobe, Atsushi Okazawa, Daisaku Ohta, Tohru Terada, Kentaro Shimizu, Masaharu Mizutani, Hirosato Takikawa, Yukihiro Sugimoto, Insights into stereoselective ring formation in canonical strigolactone: Identification of a dirigent domain-containing enzyme catalyzing orobanchol synthesis, Proc. Natl. Acad. Sci. USA, 121, e2313683121, DOI: 10.1073/pnas.2313683121, (2024).
- Ryuichiro Ishitani, Mizuki Takemoto, Kentaro Tomii, Protein ligand binding site prediction using graph transformer neural network, PLoS ONE, 19(8), e0308425, DOI:10.1371/journal.pone.0308425, (2024).