Software

CueMol

http://www.cuemol.org/ja/

CueMol is software for viewing the structure of biological macromolecules. We are developing a user interface that is seamless and easy to understand with the GUI of the operating system. In addition, CueMol is capable of producing high-quality molecular graphics for publications and presentations.

LocalColabFold

https://github.com/YoshitakaMo/localcolabfold/

LocalColabFold is an installer script designed to make ColabFold functionality available on users’ local machines. It supports wide range of operating systems, such as Windows 10 or later (using Windows Subsystem for Linux 2), macOS, and Linux.

alphafold3_tools

https://github.com/cddlab/alphafold3_tools/

alphafold3_tools is a collection of tools for AlphaFold3. It includes various scripts such as msatojson, a convertor of MSA file to the input JSON file for AlphaFold3, and paeplot, a script to visualize a predicted aligned error (PAE), and so on.